Bioinformatics Function Tools

Gene Info Queryv1.0.0
NCBI
Retrieve gene information and functional descriptions from NCBI database

Input:

Gene ID or symbol (e.g.: BRCA1, ENSG00000012048)

Output:

Gene name, functional description and related information

Development Language:

Python

Gene Summaryv1.0.0
NCBI
Get concise gene name and functional summary using Biopython and NCBI Entrez

Input:

Gene ID (e.g.: BRCA1, ENSG00000012048)

Output:

Gene name and functional summary description

Development Language:

Python

SNP Info Queryv1.0.0
NCBI
Get detailed information about Single Nucleotide Polymorphisms (SNPs)

Input:

SNP ID (e.g.: rs1217074595)

Output:

SNP position, alleles and related disease information

Development Language:

Python

BLASTNv1.0.0
NCBI
Nucleotide sequence alignment against nucleotide database. Used for Similar sequences, homologous genes and species information

Input:

DNA sequence

Output:

BLAST search report

Development Language:

Python

BLASTPv1.0.0
NCBI
Protein sequence alignment against protein database. Used for Protein homology, domain and evolutionary relationship analysis

Input:

Protein amino acid sequence

Output:

BLAST search report

Development Language:

Python

BLASTXv1.0.0
NCBI
Translated nucleotide sequence alignment against protein database. Used for Coding region prediction, EST sequence annotation and novel gene function prediction

Input:

DNA sequence

Output:

BLAST search report

Development Language:

Python

TBLASTNv1.0.0
NCBI
Protein sequence alignment against translated nucleotide database. Used for Specific protein-coding genes, novel homologous genes and cross-species gene prediction

Input:

Protein amino acid sequence

Output:

BLAST search report

Development Language:

Python

TBLASTXv1.0.0
NCBI
Translated nucleotide alignment against translated nucleotide database. Used for Evolutionarily distant homologous genes, unknown DNA sequence analysis and gene structure prediction

Input:

DNA sequence

Output:

BLAST search report

Development Language:

Python